Discovery of PF-06928215 as a high affinity inhibitor of cGAS enabled by a novel fluorescence polarization assay

PLoS One. 2017 Sep 21;12(9):e0184843. doi: 10.1371/journal.pone.0184843. eCollection 2017.

Abstract

Cyclic GMP-AMP synthase (cGAS) initiates the innate immune system in response to cytosolic dsDNA. After binding and activation from dsDNA, cGAS uses ATP and GTP to synthesize 2', 3' -cGAMP (cGAMP), a cyclic dinucleotide second messenger with mixed 2'-5' and 3'-5' phosphodiester bonds. Inappropriate stimulation of cGAS has been implicated in autoimmune disease such as systemic lupus erythematosus, thus inhibition of cGAS may be of therapeutic benefit in some diseases; however, the size and polarity of the cGAS active site makes it a challenging target for the development of conventional substrate-competitive inhibitors. We report here the development of a high affinity (KD = 200 nM) inhibitor from a low affinity fragment hit with supporting biochemical and structural data showing these molecules bind to the cGAS active site. We also report a new high throughput cGAS fluorescence polarization (FP)-based assay to enable the rapid identification and optimization of cGAS inhibitors. This FP assay uses Cy5-labelled cGAMP in combination with a novel high affinity monoclonal antibody that specifically recognizes cGAMP with no cross reactivity to cAMP, cGMP, ATP, or GTP. Given its role in the innate immune response, cGAS is a promising therapeutic target for autoinflammatory disease. Our results demonstrate its druggability, provide a high affinity tool compound, and establish a high throughput assay for the identification of next generation cGAS inhibitors.

MeSH terms

  • Anti-Inflammatory Agents, Non-Steroidal / chemical synthesis
  • Anti-Inflammatory Agents, Non-Steroidal / pharmacology
  • Antibodies / metabolism
  • Drug Discovery
  • Enzyme Inhibitors / chemical synthesis
  • Enzyme Inhibitors / pharmacology*
  • Enzyme-Linked Immunosorbent Assay
  • Fluorescence Polarization
  • Humans
  • Mass Spectrometry
  • Models, Molecular
  • Molecular Structure
  • Nucleotides, Cyclic / immunology
  • Nucleotidyltransferases / antagonists & inhibitors*
  • Nucleotidyltransferases / metabolism
  • Protein Binding
  • Pyrazoles / chemical synthesis
  • Pyrazoles / pharmacology*
  • Pyrimidines / chemical synthesis
  • Pyrimidines / pharmacology*

Substances

  • Anti-Inflammatory Agents, Non-Steroidal
  • Antibodies
  • Enzyme Inhibitors
  • Nucleotides, Cyclic
  • PF-06928215
  • Pyrazoles
  • Pyrimidines
  • cyclic guanosine monophosphate-adenosine monophosphate
  • Nucleotidyltransferases
  • cGAS protein, human

Grants and funding

Pfizer provided support in the form of salaries for the following authors: JH, AB, FV, SW, HW, DD, AA, DA, DC, MC, JC, KD, JG, SH, DH, MH, LJ, PJ, JL, LL, WL, DL, FL, NN, RN, BP, OP, DS, SS, JS, WS, TS, JT, ET, GW, JW, BL, LD, KL. Pfizer did not have any additional role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript. The specific roles of the authors are articulated in the ‘author contributions’ section.